Markers for Tomato Chromosome 11

See SGN site for chromosome map

Tomato-EXPEN 2000

(www.sgn.cornell.edu)

 

   

Marker cM PCR primers Marker sequence Sequence for tomato genotypes Comments
COSII Marker C2_At5g09880
0.00 Yes See SGN No Agarose Gel Data (PDF)
COSII Marker C2_At3g52220
10.00 Yes See SGN No Agarose Gel Data (PDF)
TG523 29.0

TG523F2/R2

TG523F3/R4

 See SGN Yes (PDF) Heinz=Gh13=Gc173, LA1777 differs by 6 SNP
COSII Marker C2_At5g16710
31.40 Yes See SGN No Agarose Gel Data (PDF)
COSII Marker C2_At4g22260
38.30 Yes See SGN No Agarose Gel Data (PDF)
COSII Marker C2_At2g14260
46.70 Yes See SGN No Agarose Gel Data (PDF)
COSII Marker C2_At5g12200
53.50 Yes See SGN No Agarose Gel Data (PDF)
TG110
54.00 Yes See SGN Yes (PDF) Cera=W28=35a=902h=108a
M37151 ~54 Yes   Yes (PDF) 100a=PR
TG286
 
54.00 Yes See SGN Yes(PDF) Cera=W28=35a=902h=108a
COSII Marker C2_At3g44880
61.90 Yes See SGN No Agarose Gel Data (PDF)
COSII Marker C2_At5g20890 76.00 Yes See SGN Yes (PDF) Heinz=Gc9=Gh13, LA1777 differs by 18 SNP and 2 INDEL
TG30 82.0 Yes   Yes Tom-Expen 1992 map
COSII Marker C2_At1g07960 82.50 Yes See SGN Yes (PDF) Heinz=Gh13=Gc9, LA1777 and LA2779 differ significantly
TG36 84.0 Yes   Yes  
COSII Marker C2_At4g32930 88.00 Yes See SGN Yes (PDF) Gh13 differs from LA1777 by at least 25 SNP and 2 INDEL
TG393 88.5       Tom-Expen 1992 map
T0302 89.0 Yes See SGN

Yes (PDF)

SCAR marker (PDF)

M82= Gc143-2 = GIh902b

LA2779, H24, and LA0386 differ
C2_At5g25760 89.5 C2-11-89F/R See SGN Yes (PDF) M82 = Gc143-2 = GIh902b, H24 differs
Hba78A16T7 89.7 BAC-11-89F/R See SGN Yes (PDF) M82 = Gc143-2 = GIh902b, H24 differs
TG105 90.0 Yes   Yes (PDF) Ty-2 gene, H24 not equal M82 not equal Gc143 = GIh902
I2 91.5 Yes     M-PCR method (pdf, chapter III)
TG26 92.0 Yes   Yes  
cLET-24-J2 94.0 Yes      
T1660 96.0 Yes      
COSII Marker C2_At5g58490
 97.00 Yes See SGN Yes (PDF)  
T120A 99.0 Yes      
COSII Marker C2_At5g51700
 103.00 Yes See SGN Yes (PDF) Heinz=Gh13=Gc9, LA1777 and LA2779 differ significantly

 

 

 

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