Location of disease resistance loci in the tomato genome

 

Disease
Pathogen
Locus Name

Chrom. Location

NCBI
Scaffold (SolGenomics)
Scaffold approx. nt
Chrom. Marker
Marker for Detection
References
Root-Knot
Meloidoygne spp.
Mi-1.2
Chr. 6, 5.5 cM
CS025319
SL2.40ch06
2,357,000
    
Seah et al., 2007
Root-Knot
Meloidoygne spp.
Mi-1.2
Chr. 6, 5.5 cM
EU033927 EU033926
SL2.40ch06
2,322,533
co-dom. SCAR
Seah et al., 2007
Root-Knot
Meloidoygne spp.
REX-1
Chr. 6, 6 cM
AY949616
SL2.40ch06
2,633,239
Taq I CAPS
Williamson et al., 1994
Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-1
Chr. 6, ca. 18 cM
  SL2.40ch06
26,206231
TG97
Taq I CAPS
Zamir et al., 1994
Tomato yellow leaf curl TYLCV, ToLCV, etc. (begomoviruses)
Ty-1
 Chr. 6, ca. 12 cM   SL2.40ch06
21,291,991
CT21
 Taq I CAPS

Perez et al., 2007

Garcia and Maxwell

Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-2
Chr. 11, ca. 89 cM
  SL2.40Ch11 51,878,176
T0302, TG105
co-dom. SCAR
Garcia et al., 2007
Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-3
Chr. 6, ca. 22 cM
  SL2.40Ch06 31,498,758
FER
co-dom. SCAR
Ji, Y. et al., 2007
Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-3a
Chr. 6, ca. 25 cM
  SL2.40Ch06 31,498,758
FER
co-dom. SCAR
Ji, Y. et al., 2007
Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-3b
Chr. 6, ca 25 cM
  SL2.40Ch06 31,498,758
FER
co-dom. SCAR
Ji et al.
Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-4
Chr. 3, ca. 81 cM
  SL2.40Ch03 6,800,337
At4g17300
co-dom. SCAR
Ji et al., 2008
Tomato yellow leaf curl
TYLCV, ToLCV, etc. (begomoviruses)
Ty-5
Chr.4, ca 29 cM
  SL2.40Ch04

2,856,299

 
SINAC1
CAPS
Abinder et al., 2009